OntoSim-Dis: an ontology of disease simulation models
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OntoSim-Dis: an ontology of disease simulation models

Release: 2026

This version:
https://w3id.org/ontosim-dis/1.1
Revision:
1.1
Authors:
Paul Cheikh Anta DIOUF
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License:
https://creativecommons.org/licenses/by/4.0/
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Cite as:
Paul Cheikh Anta DIOUF. OntoSim-Dis: an ontology of disease simulation models. Revision: 1.1. Retrieved from: https://w3id.org/ontosim-dis/1.1
Provenance of this page
Ontology Specification Draft

Abstract

OntoSim-Dis represents disease simulation models: their structure, their paradigm, compartmental or agent-based, their parameters and their execution. It also describes what each model represents: the disease, with its health states, its transitions and what governs each transition, and the context for which the model was built.

OntoSim-Dis - complete ontology: Overview back to ToC

This ontology has the following classes and properties.

Classes

Object Properties

Data Properties

Named Individuals

OntoSim-Dis - complete ontology: Description back to ToC

The complete OntoSim-Dis ontology, an ontology of disease simulation models. This file contains no term: it imports the nine modules and carries the metadata of the whole. Its central distinction concerns risk: does the risk of a transition depend on the number of individuals in some category, as in a transmissible disease, or only on the individual? The modeller describes a model and the disease it represents; the reasoner infers whether the disease is coupled to the population, and whether the model realises that coupling.

Cross-reference for OntoSim-Dis - complete ontology classes, object properties and data properties back to ToC

This section provides details for each class and property defined by OntoSim-Dis - complete ontology.

Classes

acute disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000094

A disease course with an acute onset.
has super-classes
disease course c

AcuteCourseDiseaseKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#AcuteCourseDiseaseKnowledge

A disease with an abrupt onset. Fourth course shape recognised by OGMS, alongside the chronic, progressive and transient forms. Constrains the structure of the model little, but qualifies the dynamics of entry.
is equivalent to
DiseaseKnowledgeTemplate c and (hasDiseaseCourseShape op some acute disease course c)
has super-classes
DiseaseKnowledgeTemplate c

AdministrativeRegionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#AdministrativeRegion

Administrative division of a country. Senegal has fourteen of them.
has super-classes
GeographicRegion c
is disjoint with
City c, Country c, District c

AgentBasedModelc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#AgentBasedModel

A model in which autonomous agents, each following its own behaviour, interact and produce the behaviour of the system.
has super-classes
SimulationModel c
has sub-classes
CoupledAgentBasedModel c
is in domain of
hasAgentTransition op, hasAgentType op, hasBehavior op, hasEnvironmentModel op

AgentStatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#AgentState

A state an agent can occupy. Agent-based form of a state component.
has super-classes
StateComponent c
is in range of
hasAgentState op

AgentTransitionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#AgentTransition

A change of state of an agent. Inherits from the layer 2 transition its source and target states.
has super-classes
TransitionComponent c
has sub-classes
AttributeDrivenTransition c, InteractionTriggeredTransition c
is in domain of
triggeredBy op
is in range of
hasAgentTransition op

AgentTypec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#AgentType

A category of autonomous entities in the model. The individual agent is not modelled because it exists only at run time.
has super-classes
ModelComponent c
is in domain of
agentTypeName dp, hasAgentState op, initialAgentCount dp
is in range of
hasAgentType op, involvesAgentType op

AridClimatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#AridClimate

Dry climate with little rainfall.
has super-classes
Climate c
is disjoint with
TemperateClimate c, TropicalClimate c

AttributeDrivenTransitionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#AttributeDrivenTransition

A transition triggered by the agent's own attributes alone: its age, the time spent in its current state. Individual determinant.
has super-classes
AgentTransition c
has sub-classes
StaticApproximationAgentTransition c
is disjoint with
InteractionTriggeredTransition c

Bacteriumc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Bacterium

Single-celled pathogen without a nucleus.
has super-classes
Pathogen c
is disjoint with
Fungus c, Parasite c, Virus c

Behaviorc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Behavior

A rule saying what an agent does according to its state and its surroundings.
has super-classes
RuleComponent c
is in domain of
behaviorExpression dp
is in range of
hasBehavior op

BernoulliDistributionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#BernoulliDistribution

Law of a single trial with two outcomes, of given probability.
has super-classes
ProbabilityDistribution c
is disjoint with
BetaDistribution c, ExponentialDistribution c, GammaDistribution c, NormalDistribution c, PoissonDistribution c, UniformDistribution c

BetaDistributionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#BetaDistribution

Law on the interval zero to one, used for proportions and probabilities.
has super-classes
ProbabilityDistribution c
is disjoint with
BernoulliDistribution c, ExponentialDistribution c, GammaDistribution c, NormalDistribution c, PoissonDistribution c, UniformDistribution c

chronic disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000064

A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, fall within abnormal homeostatic range.
has super-classes
disease course c

ChronicCourseDiseaseKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ChronicCourseDiseaseKnowledge

A disease whose course does not return to normal homeostasis. Requires at least one absorbing state.
is equivalent to
DiseaseKnowledgeTemplate c and (hasDiseaseCourseShape op some chronic disease course c)
has super-classes
DiseaseKnowledgeTemplate c

Cityc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#City

Urban locality
has super-classes
GeographicRegion c
is disjoint with
AdministrativeRegion c, Country c, District c

Climatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Climate

Climatic conditions influencing disease transmission. Decisive for vector-borne and water-borne diseases, where temperature and humidity govern the life cycle of the vector or of the intermediate host.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
AridClimate c, TemperateClimate c, TropicalClimate c
is in domain of
avgHumidity dp, avgTemperature dp
is in range of
hasClimate op

Compartmentc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Compartment

A group of individuals sharing the same situation, counted together. Compartmental form of a state component.
has super-classes
StateComponent c
is in domain of
compartmentInitialSize dp, compartmentSymbol dp
is in range of
dependsOnCompartment op, governsCompartment op, hasCompartment op

CompartmentalModelc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#CompartmentalModel

A model dividing the population into compartments, between which flows carry individuals at rates.
has super-classes
SimulationModel c
has sub-classes
CoupledCompartmentalModel c
is in domain of
hasCompartment op, hasEquation op, hasFlow op

CompartmentDependentRatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#CompartmentDependentRate

A rate whose value depends on the current content of one or more compartments, which makes the system non-linear and coupled. Compartmental form of population coupling.
has super-classes
RateSpecification c
is in domain of
dependsOnCompartment op
is disjoint with
ConstantRate c

ConstantRatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ConstantRate

A rate that does not depend on the current content of any compartment. Individual determinant. 'Constant' means here independent of the compartments, not fixed in time: a seasonal rate that reads no compartment is also a ConstantRate. It is then declared as such, and its value is written with rateExpression, since rateConstantValue only gives a fixed value.
has super-classes
RateSpecification c
is in domain of
rateConstantValue dp
is disjoint with
CompartmentDependentRate c

ContextKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ContextKnowledge

Second component of the recomposition Quadruplet (CK). Describes where, for whom and under which conditions a model applies.
has super-classes
SimulationKnowledgeArtifact c
is in domain of
hasClimate op, hasGeographicRegion op, hasHealthInfrastructure op, hasPopulation op
is in range of
hasContextKnowledge op

continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000002

A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity.
has super-classes
entity c
has sub-classes
generically dependent continuant c, independent continuant c, specifically dependent continuant c
is in range of
has participant op
is disjoint with
occurrent c

Countryc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Country

Highest administrative level.
has super-classes
GeographicRegion c
is disjoint with
AdministrativeRegion c, City c, District c

CoupledAgentBasedModelc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#CoupledAgentBasedModel

An agent-based model containing at least one transition triggered by an interaction. Inferred by the reasoner without anyone declaring the model infectious.
is equivalent to
AgentBasedModel c and (hasAgentTransition op some InteractionTriggeredTransition c)
has super-classes
AgentBasedModel c

CoupledCompartmentalModelc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#CoupledCompartmentalModel

A compartmental model containing at least one coupled flow. Inferred by the reasoner without anyone declaring the model infectious.
is equivalent to
CompartmentalModel c and (hasFlow op some CoupledFlow c)
has super-classes
CompartmentalModel c

CoupledDiseaseKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#CoupledDiseaseKnowledge

Disease knowledge containing at least one coupled transition. The reasoner classifies here any disease one of whose transitions depends on the state of the population WITHOUT anyone having declared it infectious.
is equivalent to
DiseaseKnowledgeTemplate c and (hasStateTransition op some CoupledTransition c)
has super-classes
DiseaseKnowledgeTemplate c

CoupledFlowc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#CoupledFlow

A flow whose rate depends on the content of a compartment.
is equivalent to
TransitionFlow c and (hasRate op some CompartmentDependentRate c)
has super-classes
TransitionFlow c

CoupledTransitionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#CoupledTransition

A health state transition governed by at least one population-coupled determinant.
is equivalent to
HealthStateTransition c and (isGovernedBy op some PopulationCoupledDeterminant c)
has super-classes
HealthStateTransition c

CouplingSourcec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#CouplingSource

A category whose current head count can be read, and whose reading may make a risk vary. Abstract class: never instantiated directly, only subclassed. A human health state in the core, a reservoir state in the infectious extension.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
HealthState c, ReservoirState c
is in range of
dependsOnCountIn op

DetectionInterventionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#DetectionIntervention

An intervention whose purpose is to find out whether an individual has the disease, rather than to treat it. It changes a determinant through what it triggers: a detected individual is treated, followed up or isolated.
has super-classes
Intervention c
has sub-classes
DiagnosisIntervention c, ScreeningIntervention c
is in domain of
detects op, hasSensitivity op, hasSpecificity op

DiagnosisInterventionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#DiagnosisIntervention

Detection applied to an individual who already shows signs of the disease. This is what clinical practice does in the absence of screening.
has super-classes
DetectionIntervention c
is disjoint with
ScreeningIntervention c

DifferentialEquationc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#DifferentialEquation

The equation giving the variation over time of the content of one compartment, as the balance of the flows entering and leaving it.
has super-classes
ModelComponent c
is in domain of
equationExpression dp, governsCompartment op, involvesFlow op
is in range of
hasEquation op

DirectlyCoupledDeterminantc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#DirectlyCoupledDeterminant

DEFINED class: a determinant whose value is read off a head count of humans. Signature of direct person-to-person transmission. NOT disjoint from IndirectlyCoupledDeterminant: one risk may read both, which is the case of the full schistosomiasis cycle.
is equivalent to
PopulationCoupledDeterminant c and (dependsOnCountIn op some HealthState c)
has super-classes
PopulationCoupledDeterminant c

diseasec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000031

A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
has super-classes
disposition c
is in domain of
hasMaterialBasisIn op
is in range of
representsDisease op

disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000063

The totality of all processes through which a given disease instance is realized.
has super-classes
process c
has sub-classes
acute disease course c, chronic disease course c, progressive disease course c, transient disease course c
is in range of
hasDiseaseCourseShape op, representsPhaseOf op

DiseaseKnowledgeTemplatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#DiseaseKnowledgeTemplate

First component of the recomposition Quadruplet (DK). Structured knowledge about a disease, independent of its type, of the modelling paradigm and of the geographical context. It is an information artifact: it is ABOUT a disease, it is not the disease.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
AcuteCourseDiseaseKnowledge c, ChronicCourseDiseaseKnowledge c, CoupledDiseaseKnowledge c, IndividualProgressionDiseaseKnowledge c, InfectiousDiseaseKnowledge c, ProgressiveCourseDiseaseKnowledge c, TransientCourseDiseaseKnowledge c
is in domain of
caseFatalityRate dp, diseaseName dp, hasDiseaseCourseShape op, hasEpidemiologicalRole op, hasHealthState op, hasPathogen op, hasRefToDO dp, hasRefToICD dp, hasRefToSNOMED dp, hasReservoirState op, hasRiskFactor op, hasStateTransition op, hasTransmissionRoute op, representsDisease op
is in range of
detects op

disorderc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000045

A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease.
has super-classes
material entity c
is in range of
hasMaterialBasisIn op

dispositionc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000016

b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up.
has super-classes
realizable entity c
has sub-classes
disease c, predisposition to disease of type X c

Districtc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#District

Administrative division of a region.
has super-classes
GeographicRegion c
is disjoint with
AdministrativeRegion c, City c, Country c

DynamicParameterc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#DynamicParameter

A parameter whose value varies with time, for instance a time-dependent transmission rate.
has super-classes
ModelParameter c
is disjoint with
StaticParameter c

entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000001

An entity is anything that exists or has existed or will exist.
has sub-classes
continuant c, occurrent c

EnvironmentallyMediatedDiseaseKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#EnvironmentallyMediatedDiseaseKnowledge

DEFINED class: an infectious disease whose transmission goes through a non-human head count. The reasoner infers it from the structure of the model, WITHOUT anyone having declared the disease environmental. Schistosomiasis, malaria and cholera fall here; COVID, influenza and measles do not.
is equivalent to
InfectiousDiseaseKnowledge c and (hasReservoirState op some ReservoirState c)
has super-classes
InfectiousDiseaseKnowledge c

EnvironmentComponentc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#EnvironmentComponent

An external or contextual factor influencing the modelled system: weather, terrain, infrastructure.
has super-classes
ModelComponent c
has sub-classes
EnvironmentModel c
is disjoint with
ModelParameter c, RuleComponent c, StateComponent c, TransitionComponent c

EnvironmentModelc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#EnvironmentModel

The surroundings in which agents move and meet. Its spatial nature is given by the spatial type of the model structure, in layer 2 and is not repeated here.
has super-classes
EnvironmentComponent c
is in range of
hasEnvironmentModel op

EpidemiologicalRolec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#EpidemiologicalRole

The part an organism plays in the transmission of a disease.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
HostRole c, IntermediateHostRole c, ReservoirRole c, VectorRole c
is in range of
hasEpidemiologicalRole op, isStateOfRole op, transmittedThroughRole op

ExecutionKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ExecutionKnowledge

How to run the model: which simulator, how many runs, with which random seed. Fourth component of the Quadruplet, alongside disease, context and structure knowledge. It is not the execution itself, which is a process, but the configuration that execution realises.
has super-classes
SimulationKnowledgeArtifact c
is in domain of
numberOfRuns dp, randomSeed dp, simulatorName dp, simulatorVersion dp
is in range of
appliesExecutionKnowledge op, hasExecutionKnowledge op

ExponentialDistributionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ExponentialDistribution

Law of the time between two events occurring at a constant rate.
has super-classes
ProbabilityDistribution c
is disjoint with
BernoulliDistribution c, BetaDistribution c, GammaDistribution c, NormalDistribution c, PoissonDistribution c, UniformDistribution c

extended organismc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000087

An object aggregate consisting of an organism and all material entities located within the organism, overlapping the organism, or occupying sites formed in part by the organism.
has super-classes
material entity c

FreeLivingStageStatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#FreeLivingStageState

Head count of a free-living stage of the pathogen present in an environment, outside any host. The cercariae in the water, the miracidia. Under the quasi-equilibrium assumption, this head count is read off that of the hosts producing it and needs no compartment of its own.
has super-classes
ReservoirState c
is disjoint with
NonHumanHostState c

Fungusc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Fungus

Pathogenic fungus.
has super-classes
Pathogen c
is disjoint with
Bacterium c, Parasite c, Virus c

GammaDistributionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#GammaDistribution

Law on positive values, used for costs and durations.
has super-classes
ProbabilityDistribution c
is disjoint with
BernoulliDistribution c, BetaDistribution c, ExponentialDistribution c, NormalDistribution c, PoissonDistribution c, UniformDistribution c

generically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000031

b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities.
has super-classes
continuant c
has sub-classes
information content entity c
is disjoint with
independent continuant c, specifically dependent continuant c

GeographicRegionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#GeographicRegion

The territory a model applies to. Four administrative levels: country, region, district, city.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
AdministrativeRegion c, City c, Country c, District c
is in domain of
isSubRegionOf op, numberOfZones dp, regionName dp
is in range of
hasGeographicRegion op, isLocatedInRegion op, isSubRegionOf op

GranularityLevelc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#GranularityLevel

Level of detail at which the modelled entities are described. Closed list.
is equivalent to
{ Group ni , Individual ni , Multiscale ni , Regional ni }
has super-classes
SimulationKnowledgeArtifact c
is in range of
hasGranularityLevel op
has members
Group ni, Individual ni, Multiscale ni, Regional ni

HealthCentrec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#HealthCentre

Local facility for primary care.
has super-classes
HealthInfrastructure c

HealthInfrastructurec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#HealthInfrastructure

Health facilities available in the context. Determines the capacity to respond, and the saturation threshold beyond which lethality rises.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
HealthCentre c, Hospital c, VaccinationCentre c
is in domain of
hospitalCapacity dp
is in range of
hasHealthInfrastructure op

HealthStatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#HealthState

A state an individual can occupy with respect to a disease. It is knowledge about a phase of the disease course, NOT a component of a model: a compartment or an agent state represents it, through the bridge representsHealthState.
has super-classes
CouplingSource c
is in domain of
hasEndAge op, hasOnsetAge op, healthStateName dp, isAbsorbingState dp, representsPhaseOf op, supersedesHealthState op
is in range of
hasHealthState op, hasSourceHealthState op, hasTargetHealthState op, representsHealthState op, supersedesHealthState op
is disjoint with
ReservoirState c, HealthStateTransition c, IndividualAttribute c, TransitionDeterminant c, HealthStateTransition c, RiskFactor c, TransitionDeterminant c

HealthStateTransitionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#HealthStateTransition

The passage of an individual from one health state to another. Pivot class of the core: it is the only place where the structure of the model is decided, because it is the determinant of the transition that imposes its mathematical form.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
CoupledTransition c
is in domain of
hasSourceHealthState op, hasTargetHealthState op, isGovernedBy op
is in range of
hasStateTransition op, representsStateTransition op
is disjoint with
ReservoirState c, HealthState c, IndividualAttribute c, TransitionDeterminant c, HealthState c, RiskFactor c, TransitionDeterminant c

Hospitalc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Hospital

Facility with beds, able to admit severe cases.
has super-classes
HealthInfrastructure c

HostRolec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#HostRole

Organism in which the pathogen develops and which suffers the disease.
has super-classes
EpidemiologicalRole c
is disjoint with
IntermediateHostRole c, ReservoirRole c, VectorRole c

immaterial entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000141

has super-classes
independent continuant c
is disjoint with
material entity c

independent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000004

b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t.
has super-classes
continuant c
has sub-classes
immaterial entity c, material entity c
is disjoint with
specifically dependent continuant c, generically dependent continuant c

IndirectlyCoupledDeterminantc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#IndirectlyCoupledDeterminant

DEFINED class: a determinant whose value is read off a non-human head count. Signature of reservoir-mediated or environmentally mediated transmission. The reasoner classifies here the infection risk of schistosomiasis, malaria and cholera.
is equivalent to
PopulationCoupledDeterminant c and (dependsOnCountIn op some ReservoirState c)
has super-classes
PopulationCoupledDeterminant c

IndividualAttributec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#IndividualAttribute

A clinical or demographic characteristic of an individual whose value can change the course of the disease: age, sex, comorbidity, biomarker, vaccination status.
has super-classes
SimulationKnowledgeArtifact c
is in range of
dependsOnAttribute op
is disjoint with
HealthState c, HealthStateTransition c, TransitionDeterminant c

IndividualDeterminantc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#IndividualDeterminant

A determinant whose value does not depend on the other individuals. It may read attributes of the individual concerned (age, sex, comorbidity, biomarker), or none, like the recovery rate γ of the SIR model. Structural consequence: individual trajectories are independent, which allows microsimulation and multi-state models.
has super-classes
TransitionDeterminant c
is in domain of
dependsOnAttribute op
is disjoint with
PopulationCoupledDeterminant c

IndividualProgressionDiseaseKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#IndividualProgressionDiseaseKnowledge

Disease knowledge all of whose transitions are individual. Modellable by microsimulation, multi-state model or decision tree.
is equivalent to
DiseaseKnowledgeTemplate c and (hasStateTransition op only isGovernedBy op only IndividualDeterminant c)
has super-classes
DiseaseKnowledgeTemplate c

InfectiousDiseaseKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#InfectiousDiseaseKnowledge

Knowledge of a disease caused by a pathogen. DEFINED class: any disease knowledge declaring a pathogen is classified here by the reasoner, without anyone having to say it is infectious.
is equivalent to
DiseaseKnowledgeTemplate c and (hasPathogen op some Pathogen c)
has super-classes
DiseaseKnowledgeTemplate c
has sub-classes
EnvironmentallyMediatedDiseaseKnowledge c
is in domain of
basicReproductionNumber dp, hasPermanentImmunity dp, incubationPeriodDays dp, infectiousPeriodDays dp, latentPeriodDays dp, reinfectionPossible dp

information content entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000030

A generically dependent continuant that is about some thing.
has super-classes
generically dependent continuant c
has sub-classes
SimulationKnowledgeArtifact c
is in domain of
is about op

InitialConditionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#InitialCondition

A parameter giving the value of a quantity at the start of the simulation.
has super-classes
ModelParameter c

InteractionTriggeredTransitionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#InteractionTriggeredTransition

A transition triggered by an interaction with other agents, hence depending on their state. Agent-based form of population coupling. Defined class: the reasoner classifies here any agent transition triggered by an interaction.
is equivalent to
AgentTransition c and (triggeredBy op some InteractionType c)
has super-classes
AgentTransition c
is disjoint with
AttributeDrivenTransition c

InteractionTypec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#InteractionType

A kind of encounter or exchange between agents.
has super-classes
ModelComponent c
is in domain of
contactRatePerDay dp, interactionProbability dp, involvesAgentType op
is in range of
triggeredBy op

IntermediateHostRolec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#IntermediateHostRole

Organism in which the pathogen goes through a stage of its life cycle before reaching its final host. The snail in schistosomiasis.
has super-classes
EpidemiologicalRole c
is disjoint with
HostRole c, ReservoirRole c, VectorRole c

Interventionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Intervention

A control measure applied during the simulation, which changes the course of the disease by modifying at least one determinant.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
DetectionIntervention c, NonPharmaceuticalIntervention c, PharmaceuticalIntervention c, TransmissionReducingIntervention c
is in domain of
coverageRate dp, interventionEndDate dp, interventionIntensity dp, interventionStartDate dp, modifiesDeterminant op

InterventionScenarioc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#InterventionScenario

A scenario in which one or more interventions are applied: vaccination, treatment, control measure.
has super-classes
SimulationScenario c

Isolationc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Isolation

Separation of individuals known to be infectious.
has super-classes
NonPharmaceuticalIntervention c

MaskWearingc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#MaskWearing

Reduction of the probability of transmission during a contact.
has super-classes
NonPharmaceuticalIntervention c

material entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000040

A material entity is an independent continuant that has some portion of matter as proper or improper continuant part.
has super-classes
independent continuant c
has sub-classes
disorder c, extended organism c, organism population c
is disjoint with
immaterial entity c

MixedPopulationc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#MixedPopulation

A population combining urban and rural zones within the same territory.
has super-classes
Population c
is disjoint with
RuralPopulation c, UrbanPopulation c

ModelComponentc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ModelComponent

A constituent part of the structure of a model.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
AgentType c, DifferentialEquation c, EnvironmentComponent c, InteractionType c, ModelParameter c, RuleComponent c, StateComponent c, TransitionComponent c
is in domain of
realisesDeterminant op
is in range of
hasComponent op

ModelNaturec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ModelNature

States whether the model explains mechanisms or merely reproduces observations. Closed list. This criterion decides what can be recomposed: a black box is not recomposed the way a mechanistic model is.
is equivalent to
{ Empirical ni , Grey box ni , Mechanistic ni }
has super-classes
SimulationKnowledgeArtifact c
is in range of
hasModelNature op
has members
Empirical ni, Grey box ni, Mechanistic ni

ModelParameterc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ModelParameter

A named quantity whose value settles part of the behaviour of the model. Merges the former ParameterComponent and ModelParameter.
has super-classes
ModelComponent c
has sub-classes
DynamicParameter c, InitialCondition c, RateSpecification c, StaticParameter c
is in domain of
defaultValue dp, hasUncertaintyDistribution op, parameterName dp, parameterUnit dp, parameterValue dp
is in range of
hasEndAge op, hasOnsetAge op, hasParameter op, hasSensitivity op, hasSpecificity op, quantifiedBy op
is disjoint with
EnvironmentComponent c, RuleComponent c, StateComponent c, TransitionComponent c

ModelPurposec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ModelPurpose

Purpose the model was built for. Closed list. Knowing the purpose is what lets one judge whether a model fits a given situation, and identify the features it must combine.
is equivalent to
{ Dynamics research ni , Epidemic planning ni , Methodological research ni , Retrospective analysis ni }
has super-classes
SimulationKnowledgeArtifact c
is in range of
hasModelPurpose op
has members
Dynamics research ni, Epidemic planning ni, Methodological research ni, Retrospective analysis ni

ModelScopec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ModelScope

States whether the model can be retuned for several diseases or was built for one. Closed list. This is the criterion that decides whether a model is reusable elsewhere.
is equivalent to
{ General ni , Specific ni }
has super-classes
SimulationKnowledgeArtifact c
is in range of
hasModelScope op
has members
General ni, Specific ni

ModelStructureKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ModelStructureKnowledge

Knowledge describing the internal structure of a model: its components, and its choices of handling of chance (deterministic or stochastic), time, space and granularity. MSK component of the recomposition Quadruplet.
has super-classes
SimulationKnowledgeArtifact c
is in domain of
hasComponent op, hasGranularityLevel op, hasParadigm op, hasSpatialType op, hasTemporalType op, simulationDurationInDays dp, timeStepInDays dp
is in range of
hasStructureKnowledge op

MovementRestrictionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#MovementRestriction

Limitation of movement: lockdown, curfew, closure of borders.
has super-classes
NonPharmaceuticalIntervention c

NonHumanHostStatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#NonHumanHostState

Head count of non-human organisms in a given state of the pathogen cycle. The infected snails of schistosomiasis, the infectious mosquitoes of malaria.
has super-classes
ReservoirState c
is disjoint with
FreeLivingStageState c

NonPharmaceuticalInterventionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#NonPharmaceuticalIntervention

An intervention acting on behaviour or on regulation without any medical product.
has super-classes
Intervention c
has sub-classes
Isolation c, MaskWearing c, MovementRestriction c, Quarantine c, SchoolClosure c, SocialDistancing c
is disjoint with
PharmaceuticalIntervention c

NormalDistributionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#NormalDistribution

Symmetric law characterised by a mean and a standard deviation.
has super-classes
ProbabilityDistribution c
is disjoint with
BernoulliDistribution c, BetaDistribution c, ExponentialDistribution c, GammaDistribution c, PoissonDistribution c, UniformDistribution c

occurrentc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000003

An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region.
has super-classes
entity c
has sub-classes
process c
is in domain of
has participant op
is disjoint with
continuant c

organism populationc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000084

An aggregate of organisms of the same type.
has super-classes
material entity c

ParadigmTypec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ParadigmType

Nature of the model's handling of chance: deterministic or stochastic. Closed list. Despite its name, this class does not denote the modelling paradigm in the sense of layers 3A and 3B (agents, compartments): a compartmental model may be deterministic or stochastic.
is equivalent to
{ Deterministic ni , Stochastic ni }
has super-classes
SimulationKnowledgeArtifact c
is in range of
hasParadigm op
has members
Deterministic ni, Stochastic ni

Parasitec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Parasite

Organism living at the expense of a host, often with a life cycle passing through several hosts.
has super-classes
Pathogen c
is disjoint with
Bacterium c, Fungus c, Virus c

Pathogenc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Pathogen

The infectious agent responsible for the disease.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
Bacterium c, Fungus c, Parasite c, Virus c
is in domain of
hasRefToNCBITaxon dp, pathogenName dp
is in range of
hasPathogen op

PharmaceuticalInterventionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#PharmaceuticalIntervention

An intervention using a medical product: vaccine, antiviral, antibiotic.
has super-classes
Intervention c
has sub-classes
Treatment c, Vaccination c
is disjoint with
NonPharmaceuticalIntervention c

PoissonDistributionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#PoissonDistribution

Law of the number of events occurring in a fixed interval.
has super-classes
ProbabilityDistribution c
is disjoint with
BernoulliDistribution c, BetaDistribution c, ExponentialDistribution c, GammaDistribution c, NormalDistribution c, UniformDistribution c

Populationc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Population

A group of individuals in a geographical context. Partial alignment with osdi:Population, which describes a clinical cohort by age, sex, life expectancy and size, here the population is situated, with its density, its households and its territory. The overlap is partial and must be documented as such.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
MixedPopulation c, RuralPopulation c, UrbanPopulation c
is in domain of
averageHouseholdSize dp, isLocatedInRegion op, medianAge dp, populationDensity dp, populationSize dp
is in range of
hasPopulation op

PopulationCoupledDeterminantc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#PopulationCoupledDeterminant

A determinant whose value depends on how many individuals are currently in some category, human or not. Canonical example: the force of infection. Structural consequence: the system is non-linear and coupled, individual trajectories are not independent.
has super-classes
TransitionDeterminant c
has sub-classes
DirectlyCoupledDeterminant c, IndirectlyCoupledDeterminant c
is in domain of
dependsOnCountIn op
is disjoint with
IndividualDeterminant c

predisposition to disease of type Xc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000030

A disposition in an organism that constitutes an increased risk of the organism's subsequently developing the disease X.
has super-classes
disposition c

ProbabilityDistributionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ProbabilityDistribution

A probability law characterising the uncertainty of a parameter, or the random draw of a value.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
BernoulliDistribution c, BetaDistribution c, ExponentialDistribution c, GammaDistribution c, NormalDistribution c, PoissonDistribution c, UniformDistribution c
is in domain of
alphaParameter dp, betaParameter dp, lambdaParameter dp, lowerLimitParameter dp, meanParameter dp, probabilityParameter dp, standardDeviationParameter dp, upperLimitParameter dp
is in range of
hasUncertaintyDistribution op

processc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000015

An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
has super-classes
occurrent c
has sub-classes
SimulationExecution c, disease course c
is in domain of
has input op, realizes op
is in range of
realized in op

progressive disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000065

A disease course that (a) does not terminate in a return to normal homeostasis and (b) would, absent intervention, involve an increasing deviation from homeostasis.
has super-classes
disease course c

ProgressiveCourseDiseaseKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ProgressiveCourseDiseaseKnowledge

A disease with an increasing deviation from homeostasis. Requires an ordered progression through stages, without return.
is equivalent to
DiseaseKnowledgeTemplate c and (hasDiseaseCourseShape op some progressive disease course c)
has super-classes
DiseaseKnowledgeTemplate c

qualityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000019

a quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized.
has super-classes
specifically dependent continuant c
is disjoint with
realizable entity c

Quarantinec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Quarantine

Separation of individuals who may have been exposed, to prevent them from transmitting.
has super-classes
NonPharmaceuticalIntervention c

RateSpecificationc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#RateSpecification

The way the rate of a flow is determined.
has super-classes
ModelParameter c
has sub-classes
CompartmentDependentRate c, ConstantRate c
is in domain of
rateExpression dp
is in range of
hasRate op

realizable entityc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000017

To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type.
has super-classes
specifically dependent continuant c
has sub-classes
disposition c
is in domain of
realized in op
is in range of
realizes op
is disjoint with
quality c

ReservoirRolec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ReservoirRole

Organism or environment where the pathogen persists between outbreaks.
has super-classes
EpidemiologicalRole c
is disjoint with
HostRole c, IntermediateHostRole c, VectorRole c

ReservoirStatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ReservoirState

A non-human category whose current head count may make a risk vary: infected snails, cercariae present in a water body, infectious mosquitoes. It is not a health state, because the entity counted is not the individual whose disease is being modelled. It is the other kind of CouplingSource, the one that makes schistosomiasis representable.
has super-classes
CouplingSource c
has sub-classes
FreeLivingStageState c, NonHumanHostState c
is in domain of
isStateOfRole op
is in range of
hasReservoirState op
is disjoint with
HealthState c, HealthStateTransition c, TransitionDeterminant c

RiskFactorc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#RiskFactor

An element increasing the probability of a transition. May be an individual attribute, a contextual element or an exposure.
has super-classes
SimulationKnowledgeArtifact c
is in range of
hasRiskFactor op
is disjoint with
HealthState c, HealthStateTransition c, TransitionDeterminant c

RuleComponentc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#RuleComponent

A rule governing the behaviour of the model: decision rule, behaviour rule, interaction rule.
has super-classes
ModelComponent c
has sub-classes
Behavior c
is disjoint with
EnvironmentComponent c, ModelParameter c, StateComponent c, TransitionComponent c

RuralPopulationc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#RuralPopulation

A population living mainly in the countryside, with a low density and fewer contacts.
has super-classes
Population c
is disjoint with
MixedPopulation c, UrbanPopulation c

SchoolClosurec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#SchoolClosure

Closure of schools, which removes from the mixing population the age group with the highest contact rate.
has super-classes
NonPharmaceuticalIntervention c

ScreeningInterventionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ScreeningIntervention

Detection applied to a whole population, including individuals showing no sign of the disease. Newborn screening is the typical case.
has super-classes
DetectionIntervention c
is disjoint with
DiagnosisIntervention c

SimulationExecutionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#SimulationExecution

This represents the process of executing a simulation model on a simulator. It is not an information artifact but a process, because it unfolds over time.
has super-classes
process c
is in domain of
appliesExecutionKnowledge op, executesModel op, executionStatus dp, producesResult op

SimulationKnowledgeArtifactc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#SimulationKnowledgeArtifact

Information artifact carrying knowledge used to build, describe, or execute a simulation model.
has super-classes
information content entity c
has sub-classes
Climate c, ContextKnowledge c, CouplingSource c, DiseaseKnowledgeTemplate c, EpidemiologicalRole c, ExecutionKnowledge c, GeographicRegion c, GranularityLevel c, HealthInfrastructure c, HealthStateTransition c, IndividualAttribute c, Intervention c, ModelComponent c, ModelNature c, ModelPurpose c, ModelScope c, ModelStructureKnowledge c, ParadigmType c, Pathogen c, Population c, ProbabilityDistribution c, RiskFactor c, SimulationModel c, SimulationObservation c, SimulationResult c, SimulationScenario c, SpatialType c, TemporalType c, TransitionDeterminant c, TransmissionRoute c, ValidationMethod c

SimulationModelc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#SimulationModel

A representation of a system whose behaviour is studied by simulation, independently of the paradigm used.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
AgentBasedModel c, CompartmentalModel c, StaticApproximationModel c
is in domain of
creationDate dp, hasAuthor dp, hasContextKnowledge op, hasExecutionKnowledge op, hasModelNature op, hasModelPurpose op, hasModelScope op, hasParameter op, hasStructureKnowledge op, hasValidationMethod op, modelDescription dp, modelName dp, modelVersion dp, usesScenario op
is in range of
executesModel op

SimulationObservationc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#SimulationObservation

Real observed data, used to validate a model by comparison with its results.
has super-classes
SimulationKnowledgeArtifact c

SimulationResultc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#SimulationResult

Data produced by a simulation execution.
has super-classes
SimulationKnowledgeArtifact c
is in range of
producesResult op

SimulationScenarioc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#SimulationScenario

A set of hypotheses and settings under which a model is run.
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
InterventionScenario c
is in domain of
endDate dp, scenarioDurationInDays dp, startDate dp
is in range of
usesScenario op

SocialDistancingc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#SocialDistancing

Reduction of close contacts throughout the population.
has super-classes
NonPharmaceuticalIntervention c

SpatialTypec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#SpatialType

Way space is represented in the model. Closed list.
is equivalent to
{ Geographic information system ni , grid ni , Network ni , Non spatial ni }
has super-classes
SimulationKnowledgeArtifact c
is in range of
hasSpatialType op
has members
Geographic information system ni, Network ni, Non spatial ni, grid ni

specifically dependent continuantc back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000020

b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence.
has super-classes
continuant c
has sub-classes
quality c, realizable entity c
is disjoint with
independent continuant c, generically dependent continuant c

StateComponentc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#StateComponent

A state that an entity of the model can occupy at a given time. Specialised as a compartment in compartmental models [C3B] and as an agent state in agent-based models [C3A].
has super-classes
ModelComponent c
has sub-classes
AgentState c, Compartment c
is in domain of
representsHealthState op
is in range of
hasSourceState op, hasTargetState op
is disjoint with
EnvironmentComponent c, ModelParameter c, RuleComponent c, TransitionComponent c

StaticApproximationAgentTransitionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#StaticApproximationAgentTransition

An agent transition that represents a coupled transition but is triggered by the agent's own attributes alone, not by an interaction. Agent-based form of the static approximation.
is equivalent to
AttributeDrivenTransition c and (representsStateTransition op some CoupledTransition c)
has super-classes
AttributeDrivenTransition c

StaticApproximationFlowc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#StaticApproximationFlow

A flow that represents a coupled transition but whose rate is constant: it does not read the head count on which the risk depends. Compartmental form of the static approximation.
is equivalent to
TransitionFlow c and (hasRate op some ConstantRate c) and (representsStateTransition op some CoupledTransition c)
has super-classes
TransitionFlow c

StaticApproximationModelc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#StaticApproximationModel

A model containing at least one static approximation: it represents a coupled transition without realising the coupling. It therefore ignores the indirect effects of an intervention, such as herd immunity. The approximation is acceptable when the intervention studied does not change transmission; otherwise, a dynamic model is needed. Inferred by the reasoner.
is equivalent to
SimulationModel c and ((hasAgentTransition op some StaticApproximationAgentTransition c) or (hasFlow op some StaticApproximationFlow c))
has super-classes
SimulationModel c

StaticParameterc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#StaticParameter

A parameter whose value does not change during the simulation.
has super-classes
ModelParameter c
is disjoint with
DynamicParameter c

TemperateClimatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#TemperateClimate

Climate with marked seasons and moderate temperatures.
has super-classes
Climate c
is disjoint with
AridClimate c, TropicalClimate c

TemporalTypec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#TemporalType

Nature of time in the model. Closed list.
is equivalent to
{ Continuous time ni , Discrete time ni }
has super-classes
SimulationKnowledgeArtifact c
is in range of
hasTemporalType op
has members
Continuous time ni, Discrete time ni

transient disease coursec back to ToC or Class ToC

IRI: http://purl.obolibrary.org/obo/OGMS_0000066

A disease course that terminates in a return to normal homeostasis.
has super-classes
disease course c

TransientCourseDiseaseKnowledgec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#TransientCourseDiseaseKnowledge

A disease whose course can end in a return to normal homeostasis. Allows a transition back to a healthy state.
is equivalent to
DiseaseKnowledgeTemplate c and (hasDiseaseCourseShape op some transient disease course c)
has super-classes
DiseaseKnowledgeTemplate c

TransitionComponentc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#TransitionComponent

A passage from one state to another. Has exactly one source state and one target state, whatever the paradigm. A transition to several states is represented by several transitions.
has super-classes
ModelComponent c
has sub-classes
AgentTransition c, TransitionFlow c
is in domain of
hasSourceState op, hasTargetState op, representsStateTransition op
is disjoint with
EnvironmentComponent c, ModelParameter c, RuleComponent c, StateComponent c

TransitionDeterminantc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#TransitionDeterminant

What governs the rate or the probability of a transition. The distinction between its two subclasses is NOT medical but structural: it says whether the risk of one individual depends on the others. It is this distinction, and not the taxonomy of diseases, that determines the family of usable models.
is equivalent to
IndividualDeterminant c or PopulationCoupledDeterminant c
has super-classes
SimulationKnowledgeArtifact c
has sub-classes
IndividualDeterminant c, PopulationCoupledDeterminant c
is in domain of
determinantExpression dp, quantifiedBy op
is in range of
isGovernedBy op, modifiesDeterminant op, realisesDeterminant op
is disjoint with
ReservoirState c, HealthState c, HealthStateTransition c, IndividualAttribute c, HealthState c, HealthStateTransition c, RiskFactor c

TransitionFlowc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#TransitionFlow

A passage of individuals from one compartment to another, governed by a rate. Inherits from the layer 2 transition its source and target states.
has super-classes
TransitionComponent c
has sub-classes
CoupledFlow c, StaticApproximationFlow c
is in domain of
hasRate op
is in range of
hasFlow op, involvesFlow op

TransmissionReducingInterventionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#TransmissionReducingIntervention

DEFINED class: an intervention acting on a population-coupled determinant. Only makes sense for a transmissible disease, since reducing contacts changes nothing when the risk depends on the individual alone.
is equivalent to
Intervention c and (modifiesDeterminant op some PopulationCoupledDeterminant c)
has super-classes
Intervention c

TransmissionRoutec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#TransmissionRoute

The biological route by which a communicable disease passes from one host to another. Closed list.
is equivalent to
{ Airborne ni , Bloodborne ni , Direct contact ni , Droplet ni , Faecal-oral ni , Foodborne ni , Sexual ni , Vector-borne ni , Vertical ni , Waterborne ni }
has super-classes
SimulationKnowledgeArtifact c
is in domain of
transmittedThroughRole op
is in range of
hasTransmissionRoute op
has members
Airborne ni, Bloodborne ni, Direct contact ni, Droplet ni, Faecal-oral ni, Foodborne ni, Sexual ni, Vector-borne ni, Vertical ni, Waterborne ni

Treatmentc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Treatment

A drug treatment of affected individuals. Usually acts on an individual determinant: it changes the recovery or the progression of the treated individual.
has super-classes
PharmaceuticalIntervention c

TropicalClimatec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#TropicalClimate

Hot and humid climate, favourable to many vectors.
has super-classes
Climate c
is disjoint with
AridClimate c, TemperateClimate c

UniformDistributionc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#UniformDistribution

Law giving the same weight to every value between two bounds.
has super-classes
ProbabilityDistribution c
is disjoint with
BernoulliDistribution c, BetaDistribution c, ExponentialDistribution c, GammaDistribution c, NormalDistribution c, PoissonDistribution c

UrbanPopulationc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#UrbanPopulation

A population living mainly in a city, with a high density and frequent contacts.
has super-classes
Population c
is disjoint with
MixedPopulation c, RuralPopulation c

Vaccinationc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Vaccination

A campaign moving individuals from a susceptible state to a protected state.
has super-classes
PharmaceuticalIntervention c

VaccinationCentrec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#VaccinationCentre

Facility dedicated to administering vaccines.
has super-classes
HealthInfrastructure c

ValidationMethodc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#ValidationMethod

Method by which the model is shown to be fit for its purpose. Closed list.
is equivalent to
{ Adequacy validation ni , Cross-model validation ni , Historical data validation ni , Statistical Validation ni }
has super-classes
SimulationKnowledgeArtifact c
is in range of
hasValidationMethod op
has members
Adequacy validation ni, Cross-model validation ni, Historical data validation ni, Statistical Validation ni

VectorRolec back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#VectorRole

Organism carrying the pathogen from one host to another without suffering the disease.
has super-classes
EpidemiologicalRole c
is disjoint with
HostRole c, IntermediateHostRole c, ReservoirRole c

Virusc back to ToC or Class ToC

IRI: https://w3id.org/ontosim-dis#Virus

Acellular pathogen, which replicates only inside a host cell.
has super-classes
Pathogen c
is disjoint with
Bacterium c, Fungus c, Parasite c

Object Properties

appliesExecutionKnowledgeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#appliesExecutionKnowledge

Links an execution process to the configuration it realises. Functional: one execution applies exactly one configuration.

has characteristics: functional

has domain
SimulationExecution c
has range
ExecutionKnowledge c

dependsOnAttributeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#dependsOnAttribute

Links a determinant to the individual attributes it reads.
has domain
IndividualDeterminant c
has range
IndividualAttribute c

dependsOnCompartmentop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#dependsOnCompartment

Links a rate to the compartments whose current content it reads. Signature of population coupling in the compartmental paradigm.
has domain
CompartmentDependentRate c
has range
Compartment c

dependsOnCountInop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#dependsOnCountIn

Links a determinant to the categories whose current head count it reads. Signature of population coupling. The category read is a health state when the risk depends on infected humans, a reservoir state when it depends on an environment or a non-human host. Exact counterpart of dependsOnCompartment [3B] and triggeredBy an interaction [3A].
has domain
PopulationCoupledDeterminant c
has range
CouplingSource c

detectsop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#detects

Links a detection intervention to the disease knowledge it looks for.
has domain
DetectionIntervention c
has range
DiseaseKnowledgeTemplate c

executesModelop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#executesModel

Links an execution to the model it runs.

has characteristics: functional

has domain
SimulationExecution c
has range
SimulationModel c

governsCompartmentop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#governsCompartment

Links an equation to the compartment whose variation it gives.

has characteristics: functional

has domain
DifferentialEquation c
has range
Compartment c

has inputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002233

p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.
has super-properties
has participant op
has domain
process c

has outputop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002234

p has output c iff c is a participant in p, c is present at the end of p, and c is not present in the same state at the beginning of p.
has super-properties
has participant op

has participantop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0000057

a relation between a process and a continuant, in which the continuant is somehow involved in the process.
has sub-properties
has input op, has output op
has domain
occurrent c
has range
continuant c

hasAgentStateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasAgentState

Links a category of agents to the states its agents can occupy.
has domain
AgentType c
has range
AgentState c

hasAgentTransitionop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasAgentTransition

Links a model to the state changes its agents can undergo.
has domain
AgentBasedModel c
has range
AgentTransition c

hasAgentTypeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasAgentType

Links a model to the categories of agents it contains.
has domain
AgentBasedModel c
has range
AgentType c

hasBehaviorop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasBehavior

Links a model to the behaviour rules of its agents.
has domain
AgentBasedModel c
has range
Behavior c

hasClimateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasClimate

Links a context to its climatic conditions.
has domain
ContextKnowledge c
has range
Climate c

hasCompartmentop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasCompartment

Links a compartmental model to its compartments.
has domain
CompartmentalModel c
has range
Compartment c

hasComponentop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasComponent

Links a model structure to the components it contains.
has domain
ModelStructureKnowledge c
has range
ModelComponent c

hasContextKnowledgeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasContextKnowledge

Links a model to the context it was built for.
has domain
SimulationModel c
has range
ContextKnowledge c

hasDiseaseCourseShapeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasDiseaseCourseShape

Links a disease knowledge artifact to the dynamic shape of its course, as classified by OGMS. This shape constrains the structure of the model independently of the determinant: it says whether a return to health is possible, whether an absorbing state is required or whether progression is monotone.
has domain
DiseaseKnowledgeTemplate c
has range
disease course c

hasEndAgeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasEndAge

Links a health state to the parameter giving the age beyond which an individual is no longer in it.

has characteristics: functional

has domain
HealthState c
has range
ModelParameter c

hasEnvironmentModelop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasEnvironmentModel

Links a model to the surroundings in which its agents evolve.

has characteristics: functional

has domain
AgentBasedModel c
has range
EnvironmentModel c

hasEpidemiologicalRoleop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasEpidemiologicalRole

Links a disease knowledge artifact to the roles involved in its transmission cycle.
has domain
DiseaseKnowledgeTemplate c
has range
EpidemiologicalRole c

hasEquationop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasEquation

Links a compartmental model to its differential equations.
has domain
CompartmentalModel c
has range
DifferentialEquation c

hasExecutionKnowledgeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasExecutionKnowledge

Links a model to the execution configurations defined for it. Not functional: the same model may be run under several configurations, with different simulators or different run counts.
has domain
SimulationModel c
has range
ExecutionKnowledge c

hasFlowop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasFlow

Links a compartmental model to its flows.
has domain
CompartmentalModel c
has range
TransitionFlow c

hasGeographicRegionop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasGeographicRegion

Links a context to the territories it covers.
has domain
ContextKnowledge c
has range
GeographicRegion c

hasGranularityLevelop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasGranularityLevel

Links a model structure to its level of detail.

has characteristics: functional

has domain
ModelStructureKnowledge c
has range
GranularityLevel c

hasHealthInfrastructureop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasHealthInfrastructure

Links a context to the health facilities available.
has domain
ContextKnowledge c
has range
HealthInfrastructure c

hasHealthStateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasHealthState

Links a disease knowledge artifact to the health states it defines.
has domain
DiseaseKnowledgeTemplate c
has range
HealthState c

hasMaterialBasisInop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasMaterialBasisIn

Links a disease to the disorder that is its physical basis. OGMS states this in the textual definition of disease but does not formalise it. IDO formalises it under its own IRI; we declare it here so as not to depend on IDO.
has domain
disease c
has range
disorder c

hasModelNatureop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasModelNature

States whether the model is mechanistic, empirical or mixed. Functional.

has characteristics: functional

has domain
SimulationModel c
has range
ModelNature c

hasModelPurposeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasModelPurpose

Links a model to the purposes it was built for. Deliberately not functional: the same model may serve several ends, for instance understanding a dynamic and planning a response.
has domain
SimulationModel c
has range
ModelPurpose c

hasModelScopeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasModelScope

States whether the model is general or specific. Functional: a model is one or the other, not both.

has characteristics: functional

has domain
SimulationModel c
has range
ModelScope c

hasOnsetAgeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasOnsetAge

Links a health state to the parameter giving the age from which an individual may enter it.

has characteristics: functional

has domain
HealthState c
has range
ModelParameter c

hasParadigmop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasParadigm

Links a model structure to its deterministic or stochastic nature.

has characteristics: functional

has domain
ModelStructureKnowledge c
has range
ParadigmType c

hasParameterop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasParameter

Links a model to its parameters.
has domain
SimulationModel c
has range
ModelParameter c

hasPathogenop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasPathogen

Links a disease knowledge artifact to the pathogen causing it.
has domain
DiseaseKnowledgeTemplate c
has range
Pathogen c

hasPopulationop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasPopulation

Links a context to the populations it concerns.
has domain
ContextKnowledge c
has range
Population c

hasRateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasRate

Links a flow to the way its rate is determined.

has characteristics: functional

has domain
TransitionFlow c
has range
RateSpecification c

hasReservoirStateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasReservoirState

Links a disease knowledge artifact to the reservoir states involved in its transmission. A disease declaring at least one is classified as environmentally mediated, without anyone having said so.
has domain
DiseaseKnowledgeTemplate c
has range
ReservoirState c

hasRiskFactorop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasRiskFactor

Links a disease knowledge artifact to its risk factors.
has domain
DiseaseKnowledgeTemplate c
has range
RiskFactor c

hasSensitivityop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasSensitivity

Links a detection intervention to the parameter giving its sensitivity: the share of affected individuals the test does find. Going through a parameter rather than a plain number allows the sensitivity to carry its own uncertainty.

has characteristics: functional

has domain
DetectionIntervention c
has range
ModelParameter c

hasSourceHealthStateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasSourceHealthState

Start health state of a transition. Distinct from hasSourceState of layer 2, which links model components, not knowledge.

has characteristics: functional

has domain
HealthStateTransition c
has range
HealthState c

hasSourceStateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasSourceState

Start state of a transition.

has characteristics: functional

has domain
TransitionComponent c
has range
StateComponent c

hasSpatialTypeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasSpatialType

Links a model structure to its handling of space.

has characteristics: functional

has domain
ModelStructureKnowledge c
has range
SpatialType c

hasSpecificityop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasSpecificity

Links a detection intervention to the parameter giving its specificity: the share of unaffected individuals the test correctly leaves aside.

has characteristics: functional

has domain
DetectionIntervention c
has range
ModelParameter c

hasStateTransitionop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasStateTransition

Links a disease knowledge artifact to the transitions it allows.
has domain
DiseaseKnowledgeTemplate c
has range
HealthStateTransition c

hasStructureKnowledgeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasStructureKnowledge

Links a model to the knowledge describing its internal structure.

has characteristics: functional

has domain
SimulationModel c
has range
ModelStructureKnowledge c

hasTargetHealthStateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasTargetHealthState

End health state of a transition.

has characteristics: functional

has domain
HealthStateTransition c
has range
HealthState c

hasTargetStateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasTargetState

End state of a transition.

has characteristics: functional

has domain
TransitionComponent c
has range
StateComponent c

hasTemporalTypeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasTemporalType

Links a model structure to its handling of time.

has characteristics: functional

has domain
ModelStructureKnowledge c
has range
TemporalType c

hasTransmissionRouteop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasTransmissionRoute

Links a disease knowledge artifact to the routes by which it is transmitted.
has domain
DiseaseKnowledgeTemplate c
has range
TransmissionRoute c

hasUncertaintyDistributionop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasUncertaintyDistribution

Links a parameter to the probability law describing the uncertainty on its value. This is what makes probabilistic sensitivity analysis possible: instead of a single value, the parameter carries the law its value is drawn from at each repetition of the run.
has domain
ModelParameter c
has range
ProbabilityDistribution c

hasValidationMethodop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#hasValidationMethod

Links a model to the methods by which it was validated.
has domain
SimulationModel c
has range
ValidationMethod c

involvesAgentTypeop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#involvesAgentType

Links a kind of interaction to the categories of agents that take part in it.
has domain
InteractionType c
has range
AgentType c

involvesFlowop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#involvesFlow

Links an equation to the flows appearing in it.
has domain
DifferentialEquation c
has range
TransitionFlow c

is aboutop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/IAO_0000136

A (currently) primitive relation that relates an information artifact to an entity.
has sub-properties
realisesDeterminant op, representsDisease op, representsHealthState op, representsPhaseOf op, representsStateTransition op
has domain
information content entity c

isGovernedByop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#isGovernedBy

Links a transition to the determinants that set its rate or probability.
has domain
HealthStateTransition c
has range
TransitionDeterminant c

isLocatedInRegionop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#isLocatedInRegion

Links a population to the territory where it lives.
has domain
Population c
has range
GeographicRegion c

isStateOfRoleop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#isStateOfRole

Links a reservoir state to the epidemiological role whose head count it quantifies: the intermediate host role for infected snails, the reservoir role for cercariae present in the water. Functional: one head count quantifies one role only.

has characteristics: functional

has domain
ReservoirState c
has range
EpidemiologicalRole c

isSubRegionOfop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#isSubRegionOf

Links a territory to the larger territory containing it. Transitive: a district in a region in a country is in that country. RO:located in is deliberately not reused here, because it relates real material entities, whereas our regions are descriptions of territories.

has characteristics: transitive

has domain
GeographicRegion c
has range
GeographicRegion c

mereotopologically related toop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002323

A mereological relationship or a topological relationship
has sub-properties
overlaps op

modifiesDeterminantop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#modifiesDeterminant

Links an intervention to the determinants whose value it changes. This is what gives an intervention a formal meaning: without it, an intervention is a label.
has domain
Intervention c
has range
TransitionDeterminant c

overlapsop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/RO_0002131

A overlaps B if they share some part in common. x overlaps y if and only if there exists some z such that x has part z and z part of y

has characteristics: symmetric

has super-properties
mereotopologically related to op
has sub-properties
part of op

part ofop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000050

a core relation that holds between a part and its whole

has characteristics: transitive

has super-properties
overlaps op

producesResultop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#producesResult

Links an execution to the data it produces.
has domain
SimulationExecution c
has range
SimulationResult c

quantifiedByop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#quantifiedBy

Links a determinant to the parameter that gives it its value: beta, gamma, a hazard ratio.
has domain
TransitionDeterminant c
has range
ModelParameter c

realisesDeterminantop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#realisesDeterminant

States which determinant a model component realises: a compartment-dependent rate [3B] or an interaction-triggered transition [3A] both realise a population-coupled determinant.
has super-properties
is about op
has domain
ModelComponent c
has range
TransitionDeterminant c

realized inop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000054

Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
has domain
realizable entity c
has range
process c
is inverse of
realizes op

realizesop back to ToC or Object Property ToC

IRI: http://purl.obolibrary.org/obo/BFO_0000055

Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process
has domain
process c
has range
realizable entity c
is inverse of
realized in op

representsDiseaseop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#representsDisease

Links a disease knowledge artifact to the real disease it is about, a disposition borne by an organism. Only point of contact between the informational layer of OntoSim-Dis and the realist ontology OGMS.
has super-properties
is about op
has domain
DiseaseKnowledgeTemplate c
has range
disease c

representsHealthStateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#representsHealthState

States which health state a model state component stands for. A compartment S and an agent state 'susceptible' both use this same property.
has super-properties
is about op
has domain
StateComponent c
has range
HealthState c

representsPhaseOfop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#representsPhaseOf

Links a health state to the phase of the disease course it stands for. A health state is not a real phase: it is a modelling abstraction standing in for one.
has super-properties
is about op
has domain
HealthState c
has range
disease course c

representsStateTransitionop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#representsStateTransition

States which health state transition a model transition component stands for.
has super-properties
is about op
has domain
TransitionComponent c
has range
HealthStateTransition c

supersedesHealthStateop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#supersedesHealthState

Order of progression between health states, where one exists.
has domain
HealthState c
has range
HealthState c

transmittedThroughRoleop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#transmittedThroughRole

Links a transmission route to the role it passes through, when it passes through a living organism or an environment.
has domain
TransmissionRoute c
has range
EpidemiologicalRole c

triggeredByop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#triggeredBy

Links a transition to the kind of interaction that triggers it. Signature of population coupling in the agent-based paradigm.
has domain
AgentTransition c
has range
InteractionType c

usesScenarioop back to ToC or Object Property ToC

IRI: https://w3id.org/ontosim-dis#usesScenario

Links a model to the scenarios under which it is run.
has domain
SimulationModel c
has range
SimulationScenario c

Data Properties

agentTypeNamedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#agentTypeName

Name of the agent category.
has domain
AgentType c
has range
string

alphaParameterdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#alphaParameter

Shape parameter of a beta or gamma law.
has domain
ProbabilityDistribution c
has range
double

averageHouseholdSizedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#averageHouseholdSize

Average number of people per household. Governs the intensity of domestic contacts.
has domain
Population c
has range
double

avgHumiditydp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#avgHumidity

Average relative humidity as a percentage.
has domain
Climate c
has range
double

avgTemperaturedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#avgTemperature

Average annual temperature, in degrees Celsius.
has domain
Climate c
has range
double

basicReproductionNumberdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#basicReproductionNumber

Average number of secondary cases produced by one case in a fully susceptible population.
has domain
InfectiousDiseaseKnowledge c
has range
double

behaviorExpressiondp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#behaviorExpression

Textual expression of the behaviour rule.
has domain
Behavior c
has range
string

betaParameterdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#betaParameter

Second shape parameter of a beta law.
has domain
ProbabilityDistribution c
has range
double

caseFatalityRatedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#caseFatalityRate

Fraction of symptomatic cases that end in death, between 0 and 1. Generic: applies to any lethal disease.
has domain
DiseaseKnowledgeTemplate c
has range
double

compartmentInitialSizedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#compartmentInitialSize

Number of individuals in the compartment at the start of the simulation.
has domain
Compartment c
has range
double

compartmentSymboldp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#compartmentSymbol

Symbol of the compartment in the equations, for instance S or I.
has domain
Compartment c
has range
string

contactRatePerDaydp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#contactRatePerDay

Average number of interactions of this kind per agent and per day.
has domain
InteractionType c
has range
double

coverageRatedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#coverageRate

Fraction of the target population actually reached by the intervention, between 0 and 1. For a vaccination, this is the vaccination rate.
has domain
Intervention c
has range
double

creationDatedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#creationDate

Date the model was created.
has domain
SimulationModel c
has range
date Time

defaultValuedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#defaultValue

Value used when none is supplied.
has domain
ModelParameter c
has range
double

determinantExpressiondp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#determinantExpression

Textual expression of the determinant, for instance beta * I / N.
has domain
TransitionDeterminant c
has range
string

diseaseNamedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#diseaseName

Official name of the disease.
has domain
DiseaseKnowledgeTemplate c
has range
string

endDatedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#endDate

End date of the scenario.
has domain
SimulationScenario c
has range
date Time

equationExpressiondp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#equationExpression

Textual expression of the equation, for instance dS/dt = -beta * S * I / N.
has domain
DifferentialEquation c
has range
string

executionStatusdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#executionStatus

State of the execution: pending, running, completed, failed.
has domain
SimulationExecution c
has range
string

hasAuthordp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#hasAuthor

The model author's name is stored as text rather than as a class.
has domain
SimulationModel c
has range
string

hasPermanentImmunitydp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#hasPermanentImmunity

True when the immunity acquired after recovery lasts for life.
has domain
InfectiousDiseaseKnowledge c
has range
boolean

hasRefToDOdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#hasRefToDO

Disease Ontology identifier. Attaches the medical taxonomy, deliberately kept OUTSIDE the structure of the ontology.
has domain
DiseaseKnowledgeTemplate c
has range
string

hasRefToICDdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#hasRefToICD

ICD code of the disease. Follows the OSDi convention to ease alignment.
has domain
DiseaseKnowledgeTemplate c
has range
string

hasRefToNCBITaxondp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#hasRefToNCBITaxon

NCBI Taxonomy identifier of the pathogen. Attaches the biological taxonomy, deliberately kept outside the structure of the ontology.
has domain
Pathogen c
has range
string

hasRefToSNOMEDdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#hasRefToSNOMED

SNOMED CT identifier of the disease. Follows the OSDi convention.
has domain
DiseaseKnowledgeTemplate c
has range
string

healthStateNamedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#healthStateName

Name of the health state.
has domain
HealthState c
has range
string

hospitalCapacitydp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#hospitalCapacity

Number of beds available. Sets the saturation threshold.
has domain
HealthInfrastructure c
has range
integer

incubationPeriodDaysdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#incubationPeriodDays

Average time between infection and the first symptoms, in days.
has domain
InfectiousDiseaseKnowledge c
has range
double

infectiousPeriodDaysdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#infectiousPeriodDays

Average duration during which a host can transmit, in days.
has domain
InfectiousDiseaseKnowledge c
has range
double

initialAgentCountdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#initialAgentCount

Number of agents of this category at the start of the simulation.
has domain
AgentType c
has range
integer

interactionProbabilitydp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#interactionProbability

Probability that the interaction leads to the transition it triggers.
has domain
InteractionType c
has range
double

interventionEndDatedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#interventionEndDate

Date the intervention stops, which allows intermittent interventions to be modelled.
has domain
Intervention c
has range
date Time

interventionIntensitydp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#interventionIntensity

Intensity of the intervention, between 0 and 1. 0 means no effect, 1 means maximal effect.
has domain
Intervention c
has range
double

interventionStartDatedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#interventionStartDate

Date the intervention starts being applied.
has domain
Intervention c
has range
date Time

isAbsorbingStatedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#isAbsorbingState

True when no transition leaves this state, for instance death.
has domain
HealthState c
has range
boolean

lambdaParameterdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#lambdaParameter

Rate parameter of an exponential, gamma or Poisson law.
has domain
ProbabilityDistribution c
has range
double

latentPeriodDaysdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#latentPeriodDays

Average time between infection and the moment the host becomes infectious, in days. Distinct from the incubation period: one may transmit before showing symptoms.
has domain
InfectiousDiseaseKnowledge c
has range
double

lowerLimitParameterdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#lowerLimitParameter

Lower bound of a uniform law.
has domain
ProbabilityDistribution c
has range
double

meanParameterdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#meanParameter

Mean of a normal law.
has domain
ProbabilityDistribution c
has range
double

medianAgedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#medianAge

Median age of the population, in years.
has domain
Population c
has range
double

modelDescriptiondp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#modelDescription

Free-text description of the model.
has domain
SimulationModel c
has range
string

modelNamedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#modelName

Name of the model.
has domain
SimulationModel c
has range
string

modelVersiondp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#modelVersion

Version of the model.
has domain
SimulationModel c
has range
string

numberOfRunsdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#numberOfRuns

Number of repetitions of the execution, useful for stochastic models.
has domain
ExecutionKnowledge c
has range
integer

numberOfZonesdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#numberOfZones

Number of administrative sub-zones.
has domain
GeographicRegion c
has range
integer

parameterNamedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#parameterName

Name of the parameter, for instance beta.
has domain
ModelParameter c
has range
string

parameterUnitdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#parameterUnit

Unit of the parameter, for instance day^-1.
has domain
ModelParameter c
has range
string

parameterValuedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#parameterValue

Numeric value of the parameter.
has domain
ModelParameter c
has range
double

pathogenNamedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#pathogenName

Scientific name of the pathogen.
has domain
Pathogen c
has range
string

populationDensitydp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#populationDensity

Density in inhabitants per square kilometre.
has domain
Population c
has range
double

populationSizedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#populationSize

Number of individuals in the population.
has domain
Population c
has range
integer

probabilityParameterdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#probabilityParameter

Probability of success of a Bernoulli law, between 0 and 1.
has domain
ProbabilityDistribution c
has range
double

randomSeeddp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#randomSeed

Seed of the random generator, needed to reproduce a stochastic run.
has domain
ExecutionKnowledge c
has range
integer

rateConstantValuedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#rateConstantValue

Value of a constant rate, per day.
has domain
ConstantRate c
has range
double

rateExpressiondp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#rateExpression

Textual expression of the rate, for instance beta * I / N.
has domain
RateSpecification c
has range
string

regionNamedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#regionName

Official name of the territory.
has domain
GeographicRegion c
has range
string

reinfectionPossibledp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#reinfectionPossible

True when a recovered host can be infected again.
has domain
InfectiousDiseaseKnowledge c
has range
boolean

scenarioDurationInDaysdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#scenarioDurationInDays

Duration covered by the scenario in days
has domain
SimulationScenario c
has range
double

simulationDurationInDaysdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#simulationDurationInDays

Total simulated duration in days
has domain
ModelStructureKnowledge c
has range
double

simulatorNamedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#simulatorName

Name of the simulator used, for instance JaDES, GAMA, NetLogo.
has domain
ExecutionKnowledge c
has range
string

simulatorVersiondp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#simulatorVersion

Version of the simulator used.
has domain
ExecutionKnowledge c
has range
string

standardDeviationParameterdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#standardDeviationParameter

Standard deviation of a normal law.
has domain
ProbabilityDistribution c
has range
double

startDatedp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#startDate

Start date of the scenario.
has domain
SimulationScenario c
has range
date Time

timeStepInDaysdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#timeStepInDays

Duration of one simulation step in days
has domain
ModelStructureKnowledge c
has range
double

upperLimitParameterdp back to ToC or Data Property ToC

IRI: https://w3id.org/ontosim-dis#upperLimitParameter

Upper bound of a uniform law.
has domain
ProbabilityDistribution c
has range
double

Named Individuals

Adequacy validationni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#ADEQUACY

Qualitative assessment of the model's logic and assumptions.
belongs to
ValidationMethod c

Airborneni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#AIRBORNE

Through fine particles remaining suspended in the air.
belongs to
TransmissionRoute c

Bloodborneni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#BLOODBORNE

Through blood or blood products.
belongs to
TransmissionRoute c

Continuous timeni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#CONTINUOUS

Time flows continuously as in differential equations.
belongs to
TemporalType c

Cross-model validationni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#CROSS_MODEL

Comparison with an established model of the same phenomenon.
belongs to
ValidationMethod c

Deterministicni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#DETERMINISTIC

Same inputs always give the same outputs.
belongs to
ParadigmType c

Direct contactni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#DIRECT_CONTACT

Through physical contact between two hosts.
belongs to
TransmissionRoute c

Discrete timeni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#DISCRETE

Time advances by steps or by events.
belongs to
TemporalType c

Dropletni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#DROPLET

Through respiratory droplets projected over a short distance.
belongs to
TransmissionRoute c

Dynamics researchni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#DYNAMICS_RESEARCH

Exploring disease spread mechanisms, their dynamics and the factors influencing them. An explanatory purpose.
belongs to
ModelPurpose c

Empiricalni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#EMPIRICAL

Black-box model, describing the system's responses through equations fitted to experimental data, with no scientific principle or dynamic explanation. Its inner workings remain unknown.
belongs to
ModelNature c

Epidemic planningni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#EPIDEMIC_PLANNING

Anticipating and managing potential epidemics by testing interventions and strategies, such as school closures or vaccination campaigns. A predictive purpose.
belongs to
ModelPurpose c

Faecal-oralni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#FECAL_ORAL

Through ingestion of matter contaminated by faeces.
belongs to
TransmissionRoute c

Foodborneni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#FOODBORNE

Through contaminated food.
belongs to
TransmissionRoute c

Generalni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#GENERAL

Model using generic dynamics and adjustable parameters, able to simulate a wide range of diseases sharing similar mechanisms. Needs less data and serves epidemic planning.
belongs to
ModelScope c

Geographic information systemni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#GIS

Space is represented by real geographic data.
belongs to
SpatialType c

Grey boxni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#GREY_BOX

Model mixing a mechanistic part and an empirical part: some subsystems are described by their mechanisms, others by relations fitted to data.
belongs to
ModelNature c

gridni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#GRID

Space is represented by a regular grid of cells.
belongs to
SpatialType c

Groupni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#GROUP

Individuals are gathered into homogeneous groups.
belongs to
GranularityLevel c

Historical data validationni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#HISTORICAL_DATA

Comparison of the results with real observed data.
belongs to
ValidationMethod c

Individualni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#INDIVIDUAL

Each individual is represented separately.
belongs to
GranularityLevel c

Mechanisticni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#MECHANISTIC

White-box model, built on knowledge of how the system works, of its elements and their interactions. Yields causal explanations, at the cost of greater complexity.
belongs to
ModelNature c

Methodological researchni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#METHODOLOGICAL_RESEARCH

Improving the modelling approaches themselves, to make them more effective, faster or more robust. An explanatory purpose.
belongs to
ModelPurpose c

Multiscaleni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#MULTISCALE

Several levels of detail coexist in the same model.
belongs to
GranularityLevel c

Networkni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#NETWORK

Space is represented by a network of contacts or connections.
belongs to
SpatialType c

Non spatialni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#NON_SPATIAL

Space is not represented, the population is assumed well mixed.
belongs to
SpatialType c

Regionalni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#REGIONAL

The unit described is a territory.
belongs to
GranularityLevel c

Retrospective analysisni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#RETROSPECTIVE_ANALYSIS

Studying a past epidemic to assess how effective the response was and to prepare future interventions. A predictive purpose.
belongs to
ModelPurpose c

Sexualni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#SEXUAL

Through sexual contact.
belongs to
TransmissionRoute c

Specificni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#SPECIFIC

Model embedding the transmission mechanisms and factors particular to one disease, often in a given context. Needs precise data and serves the assessment of targeted interventions.
belongs to
ModelScope c

Statistical Validationni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#STATISTICAL

Statistical test of the agreement between results and reference data.
belongs to
ValidationMethod c

Stochasticni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#STOCHASTIC

Chance takes part and results vary from one run to another.
belongs to
ParadigmType c

Vector-borneni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#VECTOR_BORNE

Through a living vector, usually an arthropod. Route of malaria and dengue.
belongs to
TransmissionRoute c

Verticalni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#VERTICAL

From mother to child, during pregnancy, birth or breastfeeding.
belongs to
TransmissionRoute c

Waterborneni back to ToC or Named Individual ToC

IRI: https://w3id.org/ontosim-dis#WATERBORNE

Through contaminated water. Route of schistosomiasis and cholera.
belongs to
TransmissionRoute c

Legend back to ToC

c: Classes
op: Object Properties
dp: Data Properties
ni: Named Individuals

Acknowledgments back to ToC

The authors would like to thank Silvio Peroni for developing LODE, a Live OWL Documentation Environment, which is used for representing the Cross Referencing Section of this document and Daniel Garijo for developing Widoco, the program used to create the template used in this documentation.